2024 Phenotype and trait ontology

Phenotype and trait ontology

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August undefined, 2024

WebGitHub - pato-ontology/pato: PATO - the Phenotype And Trait Ontology pato-ontology / pato Public Notifications Fork master 27 branches 40 tags Code 791 commits Failed to load … WebWe import ontology terms related to phenotypes, traits and diseases from a variety of sources using an automated process. Ontologies used are: Descriptions are linked to ontology terms using: Mappings provided by association data sources such as Orphanet, the NHGRI-EBI GWAS catalog and ClinVar Annotations of OMIM terms created by HPO

Ensembl Variation - Phenotype and disease annotations

WebFundamentally, the gene ontology analysis is meant to answer a very simple question: “Given a list of genes found to be differentially expressed in my phenotype (e.g. disease) vs. control (e.g. healthy), what are the biological processes, cellular components and molecular functions that are implicated in this phenotype?” WebPhenotype and Attribute Ontology ( PATO) Chemical Entities of Biological Interest ( ChEBI) Planteome by http://planteome.org is licensed under a Creative Commons Attribution 4.0 … dvd-ram 書き込み禁止解除

PATO - the Phenotype And Trait Ontology < Ontology …

WebJun 3, 2024 · Trait ontology (TO) analysis is a powerful system for functional annotation and enrichment analysis of genes. However, given the complexity of the molecular … WebTrait Ontology (TO), Plant Ontology (PO), Phenotype Attribute Ontology (PATO) will be used to process text descriptions into a PSO KG enabled by multiple parent-child relations. 2. in the standardized XML and other formats defined by the OBO foundry [10]. Data APIs will be WebHuman Phenotype Ontology, a standardized vocabulary of phenotypic abnormalities encountered in human disease. With unmatched depth it enables clinicians to record and analyse data with extremely accurate computer interpretable ontology terms. Developed by The Monarch Initiative. dvd-ram 書き込み遅い

Phenotype And Trait Ontology - OBO Foundry

Building mouse phenotype ontologies - PubMed

WebGramene is, ﬁrst to provide a Trait Ontology (TO) that can be used across the cereal crops to facilitate phenotypic comparisons both within and between the genera. Second, a vocabulary for plant anatomy terms, the Plant Ontology (PO) will facilitate the curation of morphological and anatomical feature information with respect to expression, WebApr 10, 2024 · Treatment effects on phenotypic traits. First, we tested for the effects of environmental factors (latitude, temperature and predator cue) on each trait separately: wet mass (hereafter, mass), head width, wing pad length, growth rate based on mass (GRM) and growth rate based on body size (GRH) (Table 1).For mass, the three variables, … redim bWebMar 22, 2024 · The XPO implements design patterns from the Unified Phenotype Ontology (uPheno), and the principles outlined by the Open Biological and Biomedical Ontologies … redimat sa

"WebJan 8, 2010 · Phenotype ontologies are typically constructed to serve the needs of a particular community, such as annotation of genotype-phenotype associations in mouse or human. Here we demonstrate how these ontologies can be improved through assignment of logical definitions using a core ontology of phenotypic qualities and multiple additional … " - Phenotype and trait ontology

Phenotype and trait ontology

The Xenopus phenotype ontology: bridging model organism phenotype …

WebOntology Phenotype and Trait Biodiversity and ecological data Plants / germplasm PLUTO : Plant Variety Database Data on plant varieties (botanical name (Latin name), common name, UPOV code and identification; information on its denomination). WebMar 3, 2024 · For functional (enrichment) analysis of the phenotype dataset, each ontology-annotated phenotype was annotated by its top level term (s), biological system (s) (function); for example, the...

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WebHuman Phenotype Ontology, a standardized vocabulary of phenotypic abnormalities encountered in human disease. With unmatched depth it enables clinicians to record and … WebMar 1, 2004 · The diagram shows the three domains of information that are used to describe a phenotype: the observable, the trait and the experimental condition (upper, green boxes). The set of ontologies...

WebDefining the traits –Plant Ontology Consortium The value of trait descriptions in the Plant Onotology Consortium project is that they have a broad biological basis so that equivalent traits are identified across a wide range of species. Linked closely with GRAMENE For example the Zadok scale is widely used to describe stages in plant WebMay 20, 2010 · The Entity-Quality (EQ) formalism, which combines ‘entity’ terms from an anatomical or other ontology (e.g., ontologies that describe observable organism features such as behavior), with non-taxon-specific ‘quality’ terms from the Phenotype and Trait Ontology (PATO) , , has been employed in phenotype descriptions of model organism ...

WebThis ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes. Examples of qualities are red, ectopic, high … WebFeb 17, 2024 · An ontology of phenotypic qualities (properties, attributes or characteristics)., An ontology of phenotypic qualities (properties, attributes or …

WebApr 6, 2024 · The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as Atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM. HPO currently contains over …

WebApr 14, 2024 · The up- or downregulated Gene Ontology (GO) or Kyoto Encyclopedia of Genes and Genomes (KEGG) terms in two groups were analyzed through adopting GSEA software (Subramanian et al., 2005). The reference gene sets were acquired from the GO (Ashburner et al., 2000) and KEGG (Kanehisa and Goto, 2000) databases. Somatic … dvd-ram 生産終了なぜWebKeywords : Agriculture, Plant Phenotype, Plant Trait Ontology, Integrated Breeding Knowledge, Community of Practice. Abstract : Ontology engineering and knowledge modeling for the plant sciences is expected to contribute to the understanding of the basis of plant traits that determine phenotypic expression in a given environment. ... dvd-ram 略WebApr 3, 2014 · Phenotype ontologies (an excerpt from the Human Phenotype Ontology is shown here) consist of thousands of terms describing phenotypes arranged in a … redima zaragozaWebThe GUI can create two types of sunburst diagrams to represent either phenotype or drug ontologies, which is determined by the structure of the loaded files. Any numbers entered in the input file will be converted to integers and decimal points will be rounded. GUI Options. Load File: load an .tsv or .xlsx file containing drug- or phenotype ... redimax spolWebCALANGO is a comparative genomics tool that identifies genotype-phenotype associations across species. It accounts for the non-independence of species data and can detect homologous regions and molecular functional convergences linked to phenotypes. Using phylogeny-aware linear models, CALANGO can investigate the genomic and functional … dvd-ram 読み込めないWebJun 1, 2008 · Eventually, the developers of the ATO would like to expand it and become a member of the Phenotype and Trait Ontology (PATO; The OBO Foundry, 2007) effort … dvd-ram 生産終了いつWeb1 day ago · The second evaluates the variation of a complex phenotype in a major group of eukaryotes, namely the evolution of plant height in angiosperms, a key trait for the ecology, physiology, and evolution of this group. 15, 16 We also compare the proposed approach with other comparative genomic tools that perform phylogeny-aware analyses to highlight ... redimat